J4_9PIJ_009

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9PIJ|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PIJ|1|a|G|1310
9PIJ|1|a|G|1311
9PIJ|1|a|U|1312
9PIJ|1|a|U|1313
9PIJ|1|a|C|1314
*
9PIJ|1|a|G|1338
9PIJ|1|a|G|1339
9PIJ|1|a|U|1340
9PIJ|1|a|G|1341
9PIJ|1|a|A|1342
9PIJ|1|a|G|1343
*
9PIJ|1|a|C|1404
9PIJ|1|a|U|1405
*
9PIJ|1|a|A|1597
9PIJ|1|a|A|1598
9PIJ|1|a|U|1599
9PIJ|1|a|C|1600
9PIJ|1|a|G|1601
9PIJ|1|a|U|1602
9PIJ|1|a|A|1603
9PIJ|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23