J4_9PJ8_015

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGGC*GAC*GGUUG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ8|1|a|G|2825
9PJ8|1|a|G|2826
9PJ8|1|a|G|2827
9PJ8|1|a|C|2828
*
9PJ8|1|a|G|2856
9PJ8|1|a|A|2857
9PJ8|1|a|C|2858
*
9PJ8|1|a|G|2913
9PJ8|1|a|G|2914
9PJ8|1|a|U|2915
9PJ8|1|a|U|2916
9PJ8|1|a|G|2917
*
9PJ8|1|a|C|2951
9PJ8|1|a|G|2952
9PJ8|1|a|C|2953

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain j

50S ribosomal protein L14