J4_9PJ9_009

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9PJ9|1|a|G|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ9|1|a|G|1386
9PJ9|1|a|G|1387
9PJ9|1|a|U|1388
9PJ9|1|a|U|1389
9PJ9|1|a|C|1390
*
9PJ9|1|a|G|1414
9PJ9|1|a|G|1415
9PJ9|1|a|U|1416
9PJ9|1|a|G|1417
9PJ9|1|a|A|1418
9PJ9|1|a|G|1419
*
9PJ9|1|a|C|1480
9PJ9|1|a|C|1481
*
9PJ9|1|a|G|1781
9PJ9|1|a|C|1782
9PJ9|1|a|C|1783
9PJ9|1|a|C|1784
9PJ9|1|a|G|1785
9PJ9|1|a|U|1786
9PJ9|1|a|A|1787
9PJ9|1|a|C|1788

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23