J4_9PKD_001

3D structure

PDB id

9PKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ CHX and HHT treated 80S consensus ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9PKD|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKD|1|L5|C|111
9PKD|1|L5|C|112
*
9PKD|1|L5|G|278
9PKD|1|L5|A|279
9PKD|1|L5|G|280
9PKD|1|L5|U|281
9PKD|1|L5|C|282
9PKD|1|L5|G|283
*
9PKD|1|L5|C|304
9PKD|1|L5|A|305
9PKD|1|L5|A|306
9PKD|1|L5|A|307
9PKD|1|L5|G|308
9PKD|1|L5|C|309
9PKD|1|L5|G|310
*
9PKD|1|L5|U|327
9PKD|1|L5|A|328
9PKD|1|L5|A|329
9PKD|1|L5|G|330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36