J4_9PKD_002
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CAAG*CCCAGCCC*GAC*GGUAG
- Length
- 20 nucleotides
- Bulged bases
- 9PKD|1|L5|C|216, 9PKD|1|L5|C|217, 9PKD|1|L5|A|218, 9PKD|1|L5|G|219
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|196
9PKD|1|L5|A|197
9PKD|1|L5|A|198
9PKD|1|L5|G|199
*
9PKD|1|L5|C|215
9PKD|1|L5|C|216
9PKD|1|L5|C|217
9PKD|1|L5|A|218
9PKD|1|L5|G|219
9PKD|1|L5|C|220
9PKD|1|L5|C|221
9PKD|1|L5|C|222
*
9PKD|1|L5|G|226
9PKD|1|L5|A|227
9PKD|1|L5|C|228
*
9PKD|1|L5|G|240
9PKD|1|L5|G|241
9PKD|1|L5|U|242
9PKD|1|L5|A|243
9PKD|1|L5|G|244
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
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