J4_9PKD_006
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AGAUGG*CGUUC*GAAGGG*CGGCCGAU
- Length
- 25 nucleotides
- Bulged bases
- 9PKD|1|L5|A|2472, 9PKD|1|L5|G|2475, 9PKD|1|L5|G|2503, 9PKD|1|L5|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|A|2451
9PKD|1|L5|G|2452
9PKD|1|L5|A|2453
9PKD|1|L5|U|2454
9PKD|1|L5|G|2455
9PKD|1|L5|G|2456
*
9PKD|1|L5|C|2465
9PKD|1|L5|G|2466
9PKD|1|L5|U|2467
9PKD|1|L5|U|2468
9PKD|1|L5|C|2469
*
9PKD|1|L5|G|2471
9PKD|1|L5|A|2472
9PKD|1|L5|A|2473
9PKD|1|L5|G|2474
9PKD|1|L5|G|2475
9PKD|1|L5|G|2476
*
9PKD|1|L5|C|2501
9PKD|1|L5|G|2502
9PKD|1|L5|G|2503
9PKD|1|L5|C|2504
9PKD|1|L5|C|2505
9PKD|1|L5|G|2506
9PKD|1|L5|A|2507
9PKD|1|L5|U|2508
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
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