J4_9PKD_015
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- A(PSU)CUUGGGAGCGGGCGUCCCCGCCCU*AGCG(OMU)U*A(PSU)(OMG)GAAUAGG*CAUGAU
- Length
- 48 nucleotides
- Bulged bases
- 9PKD|1|S2|C|687, 9PKD|1|S2|U|688, 9PKD|1|S2|G|697, 9PKD|1|S2|G|698, 9PKD|1|S2|C|730, 9PKD|1|S2|U|732, 9PKD|1|S2|C|733, 9PKD|1|S2|C|734, 9PKD|1|S2|C|735, 9PKD|1|S2|U|871, 9PKD|1|S2|G|873, 9PKD|1|S2|A|913
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|A|685
9PKD|1|S2|PSU|686
9PKD|1|S2|C|687
9PKD|1|S2|U|688
9PKD|1|S2|U|689
9PKD|1|S2|G|690
9PKD|1|S2|G|691
9PKD|1|S2|G|692
9PKD|1|S2|A|693
9PKD|1|S2|G|694
9PKD|1|S2|C|695
9PKD|1|S2|G|696
9PKD|1|S2|G|697
9PKD|1|S2|G|698
9PKD|1|S2|C|730
9PKD|1|S2|G|731
9PKD|1|S2|U|732
9PKD|1|S2|C|733
9PKD|1|S2|C|734
9PKD|1|S2|C|735
9PKD|1|S2|C|736
9PKD|1|S2|G|737
9PKD|1|S2|C|738
9PKD|1|S2|C|739
9PKD|1|S2|C|746
9PKD|1|S2|U|747
*
9PKD|1|S2|A|795
9PKD|1|S2|G|796
9PKD|1|S2|C|797
9PKD|1|S2|G|798
9PKD|1|S2|OMU|799
9PKD|1|S2|U|800
*
9PKD|1|S2|A|865
9PKD|1|S2|PSU|866
9PKD|1|S2|OMG|867
9PKD|1|S2|G|868
9PKD|1|S2|A|869
9PKD|1|S2|A|870
9PKD|1|S2|U|871
9PKD|1|S2|A|872
9PKD|1|S2|G|873
9PKD|1|S2|G|874
*
9PKD|1|S2|C|912
9PKD|1|S2|A|913
9PKD|1|S2|U|914
9PKD|1|S2|G|915
9PKD|1|S2|A|916
9PKD|1|S2|U|917
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: