J4_9PN5_001

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

9PN5|1|A1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9PN5|1|A1|U|112
9PN5|1|A1|C|113
*
9PN5|1|A1|G|267
9PN5|1|A1|A|268
9PN5|1|A1|G|269
9PN5|1|A1|U|270
9PN5|1|A1|C|271
9PN5|1|A1|G|272
*
9PN5|1|A1|C|293
9PN5|1|A1|U|294
9PN5|1|A1|A|295
9PN5|1|A1|A|296
9PN5|1|A1|G|297
9PN5|1|A1|U|298
9PN5|1|A1|G|299
*
9PN5|1|A1|U|316
9PN5|1|A1|A|317
9PN5|1|A1|A|318
9PN5|1|A1|A|319

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain AN

Large ribosomal subunit protein eL15A

Chain Ah

60S ribosomal protein L35-A

Chain Ai

60S ribosomal protein L36-A