J4_9PN5_005

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GG*CUUAAC*GGAAGAG*UC

Length

17 nucleotides

Bulged bases

9PN5|1|A1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|G|1674
9PN5|1|A1|G|1675
*
9PN5|1|A1|C|1693
9PN5|1|A1|U|1694
9PN5|1|A1|U|1695
9PN5|1|A1|A|1696
9PN5|1|A1|A|1697
9PN5|1|A1|C|1698
*
9PN5|1|A1|G|1747
9PN5|1|A1|G|1748
9PN5|1|A1|A|1749
9PN5|1|A1|A|1750
9PN5|1|A1|G|1751
9PN5|1|A1|A|1752
9PN5|1|A1|G|1753
*
9PN5|1|A1|U|1772
9PN5|1|A1|C|1773

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L22-A

Chain Ag

60S ribosomal protein L34-A

Chain Ak

60S ribosomal protein L38