J4_9PN5_006
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GAC(PSU)G*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.3
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9PN5|1|A1|G|2130
9PN5|1|A1|A|2131
9PN5|1|A1|C|2132
9PN5|1|A1|PSU|2133
9PN5|1|A1|G|2134
*
9PN5|1|A1|C|2146
9PN5|1|A1|A|2147
9PN5|1|A1|U|2148
9PN5|1|A1|A|2149
9PN5|1|A1|G|2150
*
9PN5|1|A1|U|2186
9PN5|1|A1|G|2187
9PN5|1|A1|A|2188
9PN5|1|A1|U|2189
9PN5|1|A1|U|2190
*
9PN5|1|A1|A|2317
9PN5|1|A1|U|2318
9PN5|1|A1|U|2319
9PN5|1|A1|A|2320
9PN5|1|A1|A|2321
9PN5|1|A1|C|2322
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- Small ribosomal subunit protein eS32A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: