J4_9PN5_007
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CUG*CGG*(PSU)CUUAAGGUAG*UGAA(PSU)G
- Length
- 23 nucleotides
- Bulged bases
- 9PN5|1|A1|PSU|2314
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PN5|1|A1|C|2192
9PN5|1|A1|U|2193
9PN5|1|A1|G|2194
*
9PN5|1|A1|C|2248
9PN5|1|A1|G|2249
9PN5|1|A1|G|2250
*
9PN5|1|A1|PSU|2266
9PN5|1|A1|C|2267
9PN5|1|A1|U|2268
9PN5|1|A1|U|2269
9PN5|1|A1|A|2270
9PN5|1|A1|A|2271
9PN5|1|A1|G|2272
9PN5|1|A1|G|2273
9PN5|1|A1|U|2274
9PN5|1|A1|A|2275
9PN5|1|A1|G|2276
*
9PN5|1|A1|U|2310
9PN5|1|A1|G|2311
9PN5|1|A1|A|2312
9PN5|1|A1|A|2313
9PN5|1|A1|PSU|2314
9PN5|1|A1|G|2315
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- Small ribosomal subunit protein eS32A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: