J4_9PN5_010
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CAUUAAA(PSU)C*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9PN5|1|B5|A|359
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.4
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PN5|1|B5|C|99
9PN5|1|B5|A|100
9PN5|1|B5|U|101
9PN5|1|B5|U|102
9PN5|1|B5|A|103
9PN5|1|B5|A|104
9PN5|1|B5|A|105
9PN5|1|B5|PSU|106
9PN5|1|B5|C|107
*
9PN5|1|B5|G|307
9PN5|1|B5|C|308
9PN5|1|B5|C|309
*
9PN5|1|B5|G|357
9PN5|1|B5|U|358
9PN5|1|B5|A|359
9PN5|1|B5|A|360
9PN5|1|B5|C|361
*
9PN5|1|B5|G|383
9PN5|1|B5|G|384
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- Small ribosomal subunit protein eS4A
- Chain BI
- Small ribosomal subunit protein eS8A
- Chain BL
- Small ribosomal subunit protein uS17A
- Chain BX
- Small ribosomal subunit protein uS12A
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