J4_9PN5_011
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9PN5|1|B5|A|623, 9PN5|1|B5|A|1026, 9PN5|1|B5|C|1028, 9PN5|1|B5|U|1029, 9PN5|1|B5|A|1030, 9PN5|1|B5|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.3
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9PN5|1|B5|A|622
9PN5|1|B5|A|623
9PN5|1|B5|G|624
*
9PN5|1|B5|C|975
9PN5|1|B5|G|976
9PN5|1|B5|A|977
9PN5|1|B5|A|978
9PN5|1|B5|A|979
9PN5|1|B5|G|980
*
9PN5|1|B5|C|1021
9PN5|1|B5|C|1022
9PN5|1|B5|A|1023
9PN5|1|B5|U|1024
9PN5|1|B5|A|1025
9PN5|1|B5|A|1026
9PN5|1|B5|A|1027
9PN5|1|B5|C|1028
9PN5|1|B5|U|1029
9PN5|1|B5|A|1030
9PN5|1|B5|U|1031
9PN5|1|B5|G|1032
*
9PN5|1|B5|U|1103
9PN5|1|B5|U|1104
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- Small ribosomal subunit protein eS32A
- Chain BL
- Small ribosomal subunit protein uS17A
- Chain BN
- Small ribosomal subunit protein uS15
- Chain BO
- Small ribosomal subunit protein uS11A
- Chain BW
- Small ribosomal subunit protein uS8A
- Chain BX
- Small ribosomal subunit protein uS12A
- Chain Ba
- Small ribosomal subunit protein eS26B
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