J4_9PRD_003

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRD|1|A|G|2492
9PRD|1|A|C|2493
9PRD|1|A|C|2494
9PRD|1|A|U|2495
9PRD|1|A|G|2496
*
9PRD|1|A|C|2508
9PRD|1|A|A|2509
9PRD|1|A|U|2510
9PRD|1|A|C|2511
9PRD|1|A|A|2512
9PRD|1|A|C|2513
*
9PRD|1|A|G|2537
9PRD|1|A|C|2538
9PRD|1|A|A|2539
9PRD|1|A|C|2540
9PRD|1|A|C|2541
9PRD|1|A|G|2542
*
9PRD|1|A|C|2637
9PRD|1|A|U|2638
9PRD|1|A|C|2639
9PRD|1|A|C|2640
9PRD|1|A|A|2641
9PRD|1|A|C|2642

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial