J4_9PRD_005
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- AAA*UA*UCCCCCGU*AGUAUUAU
- Length
- 21 nucleotides
- Bulged bases
- 9PRD|1|A|C|3168, 9PRD|1|A|A|3198, 9PRD|1|A|U|3199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PRD|1|A|A|3111
9PRD|1|A|A|3112
9PRD|1|A|A|3113
*
9PRD|1|A|U|3143
9PRD|1|A|A|3144
*
9PRD|1|A|U|3167
9PRD|1|A|C|3168
9PRD|1|A|C|3169
9PRD|1|A|C|3170
9PRD|1|A|C|3171
9PRD|1|A|C|3172
9PRD|1|A|G|3173
9PRD|1|A|U|3174
*
9PRD|1|A|A|3195
9PRD|1|A|G|3196
9PRD|1|A|U|3197
9PRD|1|A|A|3198
9PRD|1|A|U|3199
9PRD|1|A|U|3200
9PRD|1|A|A|3201
9PRD|1|A|U|3202
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 4
- 39S ribosomal protein L36, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain K
- Large ribosomal subunit protein uL13m
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
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