J4_9PRD_006

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAAG*CGUUCCAG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

9PRD|1|AA|U|711, 9PRD|1|AA|C|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRD|1|AA|C|698
9PRD|1|AA|A|699
9PRD|1|AA|A|700
9PRD|1|AA|G|701
*
9PRD|1|AA|C|708
9PRD|1|AA|G|709
9PRD|1|AA|U|710
9PRD|1|AA|U|711
9PRD|1|AA|C|712
9PRD|1|AA|C|713
9PRD|1|AA|A|714
9PRD|1|AA|G|715
*
9PRD|1|AA|C|800
9PRD|1|AA|A|801
9PRD|1|AA|C|802
*
9PRD|1|AA|G|811
9PRD|1|AA|A|812
9PRD|1|AA|A|813
9PRD|1|AA|A|814
9PRD|1|AA|C|815
9PRD|1|AA|A|816
9PRD|1|AA|G|817

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial