J4_9PRQ_009
3D structure
- PDB id
- 9PRQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 9PRQ|1|Ah|U|48, 9PRQ|1|Ah|C|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PRQ_009 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.2788
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9PRQ|1|Ah|G|7
9PRQ|1|Ah|U|8
9PRQ|1|Ah|A|9
9PRQ|1|Ah|G|10
*
9PRQ|1|Ah|C|26
9PRQ|1|Ah|G|27
9PRQ|1|Ah|U|28
*
9PRQ|1|Ah|A|44
9PRQ|1|Ah|A|45
9PRQ|1|Ah|G|46
9PRQ|1|Ah|G|47
9PRQ|1|Ah|U|48
9PRQ|1|Ah|C|49
9PRQ|1|Ah|C|50
*
9PRQ|1|Ah|G|66
9PRQ|1|Ah|C|67
Current chains
- Chain Ah
- A/T-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain Ag
- Elongation factor Tu, mitochondrial
Coloring options: