J4_9PRX_003

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRX|1|A|G|2492
9PRX|1|A|C|2493
9PRX|1|A|C|2494
9PRX|1|A|U|2495
9PRX|1|A|G|2496
*
9PRX|1|A|C|2508
9PRX|1|A|A|2509
9PRX|1|A|U|2510
9PRX|1|A|C|2511
9PRX|1|A|A|2512
9PRX|1|A|C|2513
*
9PRX|1|A|G|2537
9PRX|1|A|C|2538
9PRX|1|A|A|2539
9PRX|1|A|C|2540
9PRX|1|A|C|2541
9PRX|1|A|G|2542
*
9PRX|1|A|C|2637
9PRX|1|A|U|2638
9PRX|1|A|C|2639
9PRX|1|A|C|2640
9PRX|1|A|A|2641
9PRX|1|A|C|2642

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial