J4_9PS7_006

3D structure

PDB id

9PS7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAAG*CGUUCCAG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

9PS7|1|AA|A|700, 9PS7|1|AA|U|711, 9PS7|1|AA|C|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PS7|1|AA|C|698
9PS7|1|AA|A|699
9PS7|1|AA|A|700
9PS7|1|AA|G|701
*
9PS7|1|AA|C|708
9PS7|1|AA|G|709
9PS7|1|AA|U|710
9PS7|1|AA|U|711
9PS7|1|AA|C|712
9PS7|1|AA|C|713
9PS7|1|AA|A|714
9PS7|1|AA|G|715
*
9PS7|1|AA|C|800
9PS7|1|AA|A|801
9PS7|1|AA|C|802
*
9PS7|1|AA|G|811
9PS7|1|AA|A|812
9PS7|1|AA|A|813
9PS7|1|AA|A|814
9PS7|1|AA|C|815
9PS7|1|AA|A|816
9PS7|1|AA|G|817

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial

Chain Ag

Elongation factor Tu, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial