J4_9PSI_003

3D structure

PDB id

9PSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSI|1|A|G|2492
9PSI|1|A|C|2493
9PSI|1|A|C|2494
9PSI|1|A|U|2495
9PSI|1|A|G|2496
*
9PSI|1|A|C|2508
9PSI|1|A|A|2509
9PSI|1|A|U|2510
9PSI|1|A|C|2511
9PSI|1|A|A|2512
9PSI|1|A|C|2513
*
9PSI|1|A|G|2537
9PSI|1|A|C|2538
9PSI|1|A|A|2539
9PSI|1|A|C|2540
9PSI|1|A|C|2541
9PSI|1|A|G|2542
*
9PSI|1|A|C|2637
9PSI|1|A|U|2638
9PSI|1|A|C|2639
9PSI|1|A|C|2640
9PSI|1|A|A|2641
9PSI|1|A|C|2642

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial