J4_9Q1Q_001
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 9Q1Q|1|5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q1Q_001 not in the Motif Atlas
- Homologous match to J4_8GLP_001
- Geometric discrepancy: 0.1031
- The information below is about J4_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.4
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
9Q1Q|1|5|C|111
9Q1Q|1|5|C|112
*
9Q1Q|1|5|G|278
9Q1Q|1|5|A|279
9Q1Q|1|5|G|280
9Q1Q|1|5|U|281
9Q1Q|1|5|C|282
9Q1Q|1|5|G|283
*
9Q1Q|1|5|C|304
9Q1Q|1|5|A|305
9Q1Q|1|5|A|306
9Q1Q|1|5|A|307
9Q1Q|1|5|G|308
9Q1Q|1|5|C|309
9Q1Q|1|5|G|310
*
9Q1Q|1|5|U|327
9Q1Q|1|5|A|328
9Q1Q|1|5|A|329
9Q1Q|1|5|G|330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain i
- 60S ribosomal protein L36
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