J4_9Q1Q_002

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9Q1Q|1|5|C|216, 9Q1Q|1|5|C|217, 9Q1Q|1|5|A|218, 9Q1Q|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|C|196
9Q1Q|1|5|A|197
9Q1Q|1|5|A|198
9Q1Q|1|5|G|199
*
9Q1Q|1|5|C|215
9Q1Q|1|5|C|216
9Q1Q|1|5|C|217
9Q1Q|1|5|A|218
9Q1Q|1|5|G|219
9Q1Q|1|5|C|220
9Q1Q|1|5|C|221
9Q1Q|1|5|C|222
*
9Q1Q|1|5|G|226
9Q1Q|1|5|A|227
9Q1Q|1|5|C|228
*
9Q1Q|1|5|G|240
9Q1Q|1|5|G|241
9Q1Q|1|5|U|242
9Q1Q|1|5|A|243
9Q1Q|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26