J4_9Q1Q_003
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CC*GAGGGAG*UGCGCCGCGCUCU*GAGCGCACGGGG
- Length
- 34 nucleotides
- Bulged bases
- 9Q1Q|1|5|G|959, 9Q1Q|1|5|C|972, 9Q1Q|1|5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|C|712
9Q1Q|1|5|C|713
*
9Q1Q|1|5|G|955
9Q1Q|1|5|A|956
9Q1Q|1|5|G|957
9Q1Q|1|5|G|958
9Q1Q|1|5|G|959
9Q1Q|1|5|A|960
9Q1Q|1|5|G|961
*
9Q1Q|1|5|U|971
9Q1Q|1|5|G|971|||A
9Q1Q|1|5|C|972
9Q1Q|1|5|G|973
9Q1Q|1|5|C|974
9Q1Q|1|5|C|975
9Q1Q|1|5|G|976
9Q1Q|1|5|C|977
9Q1Q|1|5|G|978
9Q1Q|1|5|C|979
9Q1Q|1|5|U|980
9Q1Q|1|5|C|981
9Q1Q|1|5|U|982
*
9Q1Q|1|5|G|1273
9Q1Q|1|5|A|1274
9Q1Q|1|5|G|1275
9Q1Q|1|5|C|1276
9Q1Q|1|5|G|1277
9Q1Q|1|5|C|1278
9Q1Q|1|5|A|1279
9Q1Q|1|5|C|1280
9Q1Q|1|5|G|1281
9Q1Q|1|5|G|1282
9Q1Q|1|5|G|1283
9Q1Q|1|5|G|1284
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- Large ribosomal subunit protein eL6
- Chain F
- 60S ribosomal protein L7
- Chain b
- eL29
- Chain e
- eL32
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