J4_9Q1S_001

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9Q1S|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|C|111
9Q1S|1|5|C|112
*
9Q1S|1|5|G|278
9Q1S|1|5|A|279
9Q1S|1|5|G|280
9Q1S|1|5|U|281
9Q1S|1|5|C|282
9Q1S|1|5|G|283
*
9Q1S|1|5|C|304
9Q1S|1|5|A|305
9Q1S|1|5|A|306
9Q1S|1|5|A|307
9Q1S|1|5|G|308
9Q1S|1|5|C|309
9Q1S|1|5|G|310
*
9Q1S|1|5|U|327
9Q1S|1|5|A|328
9Q1S|1|5|A|329
9Q1S|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain i

60S ribosomal protein L36