J4_9Q1S_007

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9Q1S|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|G|2618
9Q1S|1|5|G|2619
*
9Q1S|1|5|U|2637
9Q1S|1|5|G|2638
9Q1S|1|5|U|2639
9Q1S|1|5|G|2640
9Q1S|1|5|A|2641
9Q1S|1|5|A|2642
*
9Q1S|1|5|U|2692
9Q1S|1|5|G|2693
9Q1S|1|5|G|2694
9Q1S|1|5|A|2695
9Q1S|1|5|A|2696
9Q1S|1|5|A|2697
9Q1S|1|5|G|2698
*
9Q1S|1|5|U|2718
9Q1S|1|5|C|2719

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

eL22

Chain g

60S ribosomal protein L34

Chain k

Large ribosomal subunit protein eL38