J4_9Q2M_002

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9Q2M|1|5|C|216, 9Q2M|1|5|C|217, 9Q2M|1|5|A|218, 9Q2M|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|5|C|196
9Q2M|1|5|A|197
9Q2M|1|5|A|198
9Q2M|1|5|G|199
*
9Q2M|1|5|C|215
9Q2M|1|5|C|216
9Q2M|1|5|C|217
9Q2M|1|5|A|218
9Q2M|1|5|G|219
9Q2M|1|5|C|220
9Q2M|1|5|C|221
9Q2M|1|5|C|222
*
9Q2M|1|5|G|226
9Q2M|1|5|A|227
9Q2M|1|5|C|228
*
9Q2M|1|5|G|240
9Q2M|1|5|G|241
9Q2M|1|5|U|242
9Q2M|1|5|A|243
9Q2M|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26