J4_9Q2M_013

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAG*CGC*GAGGCCC*GC

Length

16 nucleotides

Bulged bases

9Q2M|1|ET|U|8, 9Q2M|1|ET|C|47, 9Q2M|1|ET|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q2M_013 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.2505

The information below is about J4_6UFG_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9Q2M|1|ET|G|7
9Q2M|1|ET|U|8
9Q2M|1|ET|A|9
9Q2M|1|ET|G|10
*
9Q2M|1|ET|C|25
9Q2M|1|ET|G|26
9Q2M|1|ET|C|27
*
9Q2M|1|ET|G|43
9Q2M|1|ET|A|44
9Q2M|1|ET|G|45
9Q2M|1|ET|G|46
9Q2M|1|ET|C|47
9Q2M|1|ET|C|48
9Q2M|1|ET|C|49
*
9Q2M|1|ET|G|65
9Q2M|1|ET|C|66

Current chains

Chain ET

E site Ala-tRNA

Nearby chains

Chain o

eL42