J4_9Q2O_001

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9Q2O|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|C|111
9Q2O|1|5|C|112
*
9Q2O|1|5|G|278
9Q2O|1|5|A|279
9Q2O|1|5|G|280
9Q2O|1|5|U|281
9Q2O|1|5|C|282
9Q2O|1|5|G|283
*
9Q2O|1|5|C|304
9Q2O|1|5|A|305
9Q2O|1|5|A|306
9Q2O|1|5|A|307
9Q2O|1|5|G|308
9Q2O|1|5|C|309
9Q2O|1|5|G|310
*
9Q2O|1|5|U|327
9Q2O|1|5|A|328
9Q2O|1|5|A|329
9Q2O|1|5|G|330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain i

60S ribosomal protein L36