J4_9Q2O_002

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9Q2O|1|5|C|216, 9Q2O|1|5|C|217, 9Q2O|1|5|A|218, 9Q2O|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|C|196
9Q2O|1|5|A|197
9Q2O|1|5|A|198
9Q2O|1|5|G|199
*
9Q2O|1|5|C|215
9Q2O|1|5|C|216
9Q2O|1|5|C|217
9Q2O|1|5|A|218
9Q2O|1|5|G|219
9Q2O|1|5|C|220
9Q2O|1|5|C|221
9Q2O|1|5|C|222
*
9Q2O|1|5|G|226
9Q2O|1|5|A|227
9Q2O|1|5|C|228
*
9Q2O|1|5|G|240
9Q2O|1|5|G|241
9Q2O|1|5|U|242
9Q2O|1|5|A|243
9Q2O|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26