J4_9Q2O_006

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9Q2O|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|G|2618
9Q2O|1|5|G|2619
*
9Q2O|1|5|U|2637
9Q2O|1|5|G|2638
9Q2O|1|5|U|2639
9Q2O|1|5|G|2640
9Q2O|1|5|A|2641
9Q2O|1|5|A|2642
*
9Q2O|1|5|U|2692
9Q2O|1|5|G|2693
9Q2O|1|5|G|2694
9Q2O|1|5|A|2695
9Q2O|1|5|A|2696
9Q2O|1|5|A|2697
9Q2O|1|5|G|2698
*
9Q2O|1|5|U|2718
9Q2O|1|5|C|2719

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

Large ribosomal subunit protein eL22

Chain g

60S ribosomal protein L34

Chain k

Large ribosomal subunit protein eL38