J4_9Q2O_010

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUAA*UC*GUG*CGCCC

Length

15 nucleotides

Bulged bases

9Q2O|1|5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|G|4586
9Q2O|1|5|G|4587
9Q2O|1|5|U|4588
9Q2O|1|5|A|4589
9Q2O|1|5|A|4590
*
9Q2O|1|5|U|4620
9Q2O|1|5|C|4621
*
9Q2O|1|5|G|4676
9Q2O|1|5|U|4677
9Q2O|1|5|G|4678
*
9Q2O|1|5|C|4712
9Q2O|1|5|G|4713
9Q2O|1|5|C|4714
9Q2O|1|5|C|4715
9Q2O|1|5|C|4716

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Large ribosomal subunit protein uL14