J4_9Q2P_001
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAG*CGC*GAGGCCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 9Q2P|1|2|U|8, 9Q2P|1|2|C|47, 9Q2P|1|2|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q2P_001 not in the Motif Atlas
- Homologous match to J4_4TUE_018
- Geometric discrepancy: 0.2229
- The information below is about J4_4TUE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9Q2P|1|2|G|7
9Q2P|1|2|U|8
9Q2P|1|2|A|9
9Q2P|1|2|G|10
*
9Q2P|1|2|C|25
9Q2P|1|2|G|26
9Q2P|1|2|C|27
*
9Q2P|1|2|G|43
9Q2P|1|2|A|44
9Q2P|1|2|G|45
9Q2P|1|2|G|46
9Q2P|1|2|C|47
9Q2P|1|2|C|48
9Q2P|1|2|C|49
*
9Q2P|1|2|G|65
9Q2P|1|2|C|66
Current chains
- Chain 2
- tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- Ribosomal protein L10
- Chain PP
- Small ribosomal subunit protein uS19
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