J4_9Q2P_016
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGUAGCU*AGCGCGU*GAGGCCCCGGG*CGGCACC
- Length
- 33 nucleotides
- Bulged bases
- 9Q2P|1|AT|U|8, 9Q2P|1|AT|C|48, 9Q2P|1|AT|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2P|1|AT|G|5
9Q2P|1|AT|U|6
9Q2P|1|AT|G|7
9Q2P|1|AT|U|8
9Q2P|1|AT|A|9
9Q2P|1|AT|G|10
9Q2P|1|AT|C|11
9Q2P|1|AT|U|12
*
9Q2P|1|AT|A|23
9Q2P|1|AT|G|24
9Q2P|1|AT|C|25
9Q2P|1|AT|G|26
9Q2P|1|AT|C|27
9Q2P|1|AT|G|28
9Q2P|1|AT|U|29
*
9Q2P|1|AT|G|43
9Q2P|1|AT|A|44
9Q2P|1|AT|G|45
9Q2P|1|AT|G|46
9Q2P|1|AT|C|47
9Q2P|1|AT|C|48
9Q2P|1|AT|C|49
9Q2P|1|AT|C|50
9Q2P|1|AT|G|51
9Q2P|1|AT|G|52
9Q2P|1|AT|G|53
*
9Q2P|1|AT|C|63
9Q2P|1|AT|G|64
9Q2P|1|AT|G|65
9Q2P|1|AT|C|66
9Q2P|1|AT|A|67
9Q2P|1|AT|C|68
9Q2P|1|AT|C|69
Current chains
- Chain AT
- A*/T tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain EF
- Elongation factor 1-alpha 1
- Chain PP
- Small ribosomal subunit protein uS19
- Chain XX
- 40S ribosomal protein S23
- Chain ee
- Small ribosomal subunit protein eS30
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