J4_9Q2T_002
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAAG*CCCAGCCC*GAC*GGUAG
- Length
- 20 nucleotides
- Bulged bases
- 9Q2T|1|5|C|216, 9Q2T|1|5|C|217, 9Q2T|1|5|A|218, 9Q2T|1|5|G|219
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2T|1|5|C|196
9Q2T|1|5|A|197
9Q2T|1|5|A|198
9Q2T|1|5|G|199
*
9Q2T|1|5|C|215
9Q2T|1|5|C|216
9Q2T|1|5|C|217
9Q2T|1|5|A|218
9Q2T|1|5|G|219
9Q2T|1|5|C|220
9Q2T|1|5|C|221
9Q2T|1|5|C|222
*
9Q2T|1|5|G|226
9Q2T|1|5|A|227
9Q2T|1|5|C|228
*
9Q2T|1|5|G|240
9Q2T|1|5|G|241
9Q2T|1|5|U|242
9Q2T|1|5|A|243
9Q2T|1|5|G|244
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L26
Coloring options: