J4_9Q3Q_009
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9Q3Q|1|A|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3Q_009 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.0391
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9Q3Q|1|A|C|1833
9Q3Q|1|A|U|1834
9Q3Q|1|A|2MG|1835
*
9Q3Q|1|A|C|1905
9Q3Q|1|A|G|1906
*
9Q3Q|1|A|C|1924
9Q3Q|1|A|C|1925
9Q3Q|1|A|U|1926
9Q3Q|1|A|A|1927
9Q3Q|1|A|A|1928
9Q3Q|1|A|G|1929
9Q3Q|1|A|G|1930
9Q3Q|1|A|U|1931
9Q3Q|1|A|A|1932
9Q3Q|1|A|G|1933
*
9Q3Q|1|A|C|1967
9Q3Q|1|A|G|1968
9Q3Q|1|A|A|1969
9Q3Q|1|A|A|1970
9Q3Q|1|A|U|1971
9Q3Q|1|A|G|1972
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain x
- Transfer RNA; tRNA
Coloring options: