J4_9Q3Q_012
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9Q3Q|1|a|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3Q_012 not in the Motif Atlas
- Homologous match to J4_8B0X_001
- Geometric discrepancy: 0.0773
- The information below is about J4_8B0X_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q3Q|1|a|G|115
9Q3Q|1|a|A|116
9Q3Q|1|a|G|117
9Q3Q|1|a|U|118
9Q3Q|1|a|A|119
9Q3Q|1|a|A|120
9Q3Q|1|a|U|121
9Q3Q|1|a|G|122
*
9Q3Q|1|a|U|239
9Q3Q|1|a|G|240
*
9Q3Q|1|a|C|286
9Q3Q|1|a|U|287
9Q3Q|1|a|A|288
9Q3Q|1|a|G|289
*
9Q3Q|1|a|C|311
9Q3Q|1|a|C|312
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain p
- Small ribosomal subunit protein bS16
- Chain q
- Small ribosomal subunit protein uS17
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