J4_9Q3Q_015
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9Q3Q|1|x|4SU|8, 9Q3Q|1|x|U|47, 9Q3Q|1|x|C|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3Q_015 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.1613
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9Q3Q|1|x|A|7
9Q3Q|1|x|4SU|8
9Q3Q|1|x|A|9
9Q3Q|1|x|G|10
*
9Q3Q|1|x|C|25
9Q3Q|1|x|A|26
9Q3Q|1|x|G|27
*
9Q3Q|1|x|C|43
9Q3Q|1|x|G|44
9Q3Q|1|x|U|45
9Q3Q|1|x|G7M|46
9Q3Q|1|x|U|47
9Q3Q|1|x|C|48
9Q3Q|1|x|C|49
*
9Q3Q|1|x|G|65
9Q3Q|1|x|U|66
Current chains
- Chain x
- P-site phenylalanine tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- Large ribosomal subunit protein uL16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: