J4_9Q6Q_025

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

9Q6Q|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6Q|1|2a|G|142
9Q6Q|1|2a|A|143
9Q6Q|1|2a|G|144
*
9Q6Q|1|2a|C|178
9Q6Q|1|2a|A|179
9Q6Q|1|2a|U|180
9Q6Q|1|2a|G|181
9Q6Q|1|2a|U|182
9Q6Q|1|2a|G|183
*
9Q6Q|1|2a|C|194
9Q6Q|1|2a|A|195
9Q6Q|1|2a|A|196
9Q6Q|1|2a|A|197
9Q6Q|1|2a|G|198
*
9Q6Q|1|2a|C|219
9Q6Q|1|2a|G|220
9Q6Q|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20