J4_9Q6R_004

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

9Q6R|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6R|1|1A|G|1310
9Q6R|1|1A|G|1311
9Q6R|1|1A|U|1312
9Q6R|1|1A|U|1313
9Q6R|1|1A|C|1314
*
9Q6R|1|1A|G|1338
9Q6R|1|1A|G|1339
9Q6R|1|1A|U|1340
9Q6R|1|1A|U|1341
9Q6R|1|1A|A|1342
9Q6R|1|1A|G|1343
*
9Q6R|1|1A|C|1404
9Q6R|1|1A|U|1405
*
9Q6R|1|1A|A|1597
9Q6R|1|1A|C|1598
9Q6R|1|1A|C|1599
9Q6R|1|1A|C|1600
9Q6R|1|1A|G|1601
9Q6R|1|1A|U|1602
9Q6R|1|1A|A|1603
9Q6R|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23