J4_9Q6T_021

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

9Q6T|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q6T_021 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.0972

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9Q6T|1|2A|U|1833
9Q6T|1|2A|U|1834
9Q6T|1|2A|G|1835
*
9Q6T|1|2A|C|1905
9Q6T|1|2A|G|1906
*
9Q6T|1|2A|C|1924
9Q6T|1|2A|C|1925
9Q6T|1|2A|U|1926
9Q6T|1|2A|A|1927
9Q6T|1|2A|A|1928
9Q6T|1|2A|G|1929
9Q6T|1|2A|G|1930
9Q6T|1|2A|U|1931
9Q6T|1|2A|A|1932
9Q6T|1|2A|G|1933
*
9Q6T|1|2A|C|1967
9Q6T|1|2A|G|1968
9Q6T|1|2A|A|1969
9Q6T|1|2A|A|1970
9Q6T|1|2A|A|1971
9Q6T|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA