J4_9Q87_006

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Q87_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0412

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9Q87|1|a|G|297
9Q87|1|a|G|298
9Q87|1|a|A|299
9Q87|1|a|A|300
9Q87|1|a|G|301
*
9Q87|1|a|C|316
9Q87|1|a|G|317
9Q87|1|a|C|318
9Q87|1|a|G|319
*
9Q87|1|a|C|323
9Q87|1|a|A|324
9Q87|1|a|G|325
*
9Q87|1|a|C|337
9Q87|1|a|G|338
9Q87|1|a|U|339
9Q87|1|a|A|340
9Q87|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24