J4_9Q87_007
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 9Q87|1|a|A|656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q87_007 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1385
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q87|1|a|C|603
9Q87|1|a|A|604
9Q87|1|a|A|605
9Q87|1|a|G|606
*
9Q87|1|a|C|626
9Q87|1|a|G|627
9Q87|1|a|A|628
9Q87|1|a|A|629
9Q87|1|a|G|630
*
9Q87|1|a|C|637
9Q87|1|a|G|638
9Q87|1|a|A|639
9Q87|1|a|G|640
*
9Q87|1|a|C|652
9Q87|1|a|G|653
9Q87|1|a|U|654
9Q87|1|a|U|655
9Q87|1|a|A|656
9Q87|1|a|A|657
9Q87|1|a|G|658
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
Coloring options: