J4_9Q87_009

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9Q87|1|a|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q87|1|a|G|1312
9Q87|1|a|G|1313
9Q87|1|a|U|1314
9Q87|1|a|U|1315
9Q87|1|a|C|1316
*
9Q87|1|a|G|1340
9Q87|1|a|G|1341
9Q87|1|a|U|1342
9Q87|1|a|G|1343
9Q87|1|a|A|1344
9Q87|1|a|G|1345
*
9Q87|1|a|C|1406
9Q87|1|a|U|1407
*
9Q87|1|a|A|1599
9Q87|1|a|A|1600
9Q87|1|a|U|1601
9Q87|1|a|C|1602
9Q87|1|a|G|1603
9Q87|1|a|U|1604
9Q87|1|a|A|1605
9Q87|1|a|C|1606

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23