J4_9QEH_006

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9QEH|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QEH_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0713

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9QEH|1|A|U|1350
9QEH|1|A|C|1351
*
9QEH|1|A|G|1375
9QEH|1|A|G|1376
9QEH|1|A|U|1377
9QEH|1|A|U|1378
9QEH|1|A|A|1379
9QEH|1|A|G|1380
*
9QEH|1|A|C|1441
9QEH|1|A|C|1442
*
9QEH|1|A|G|1641
9QEH|1|A|C|1642
9QEH|1|A|C|1643
9QEH|1|A|C|1644
9QEH|1|A|G|1645
9QEH|1|A|U|1646
9QEH|1|A|A|1647

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein uL23