J4_9QEQ_001
3D structure
- PDB id
- 9QEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the transcribing Pol II-DSIF-SPT6-U1 snRNP complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGG*CCA*UGCG*CGAC
- Length
- 14 nucleotides
- Bulged bases
- 9QEQ|1|a|G|117, 9QEQ|1|a|A|118
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QEQ|1|a|G|15
9QEQ|1|a|G|16
9QEQ|1|a|G|17
*
9QEQ|1|a|C|47
9QEQ|1|a|C|48
9QEQ|1|a|A|49
*
9QEQ|1|a|U|90
9QEQ|1|a|G|91
9QEQ|1|a|C|92
9QEQ|1|a|G|93
*
9QEQ|1|a|C|116
9QEQ|1|a|G|117
9QEQ|1|a|A|118
9QEQ|1|a|C|119
Current chains
- Chain a
- U1 snRNA
Nearby chains
- Chain b
- U1 small nuclear ribonucleoprotein 70 kDa
- Chain e
- Small nuclear ribonucleoprotein Sm D2
- Chain i
- Small nuclear ribonucleoprotein Sm D3
- Chain j
- Small nuclear ribonucleoprotein-associated protein
- Chain k
- Small nuclear ribonucleoprotein Sm D1
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