J4_9QOH_001

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9QOH|1|A2|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QOH|1|A2|C|111
9QOH|1|A2|C|112
*
9QOH|1|A2|G|278
9QOH|1|A2|A|279
9QOH|1|A2|G|280
9QOH|1|A2|U|281
9QOH|1|A2|C|282
9QOH|1|A2|G|283
*
9QOH|1|A2|C|304
9QOH|1|A2|A|305
9QOH|1|A2|A|306
9QOH|1|A2|A|307
9QOH|1|A2|G|308
9QOH|1|A2|C|309
9QOH|1|A2|G|310
*
9QOH|1|A2|U|327
9QOH|1|A2|A|328
9QOH|1|A2|A|329
9QOH|1|A2|G|330

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

Large ribosomal subunit protein eL13

Chain H1

Large ribosomal subunit protein eL15

Chain b2

Large ribosomal subunit protein uL29

Chain c2

Large ribosomal subunit protein eL36