J4_9QOH_003

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUC*GCCGG*CGGUCAC*GAAGCCG

Length

22 nucleotides

Bulged bases

9QOH|1|A2|G|1063, 9QOH|1|A2|C|1085, 9QOH|1|A2|C|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QOH|1|A2|C|881
9QOH|1|A2|U|882
9QOH|1|A2|C|883
*
9QOH|1|A2|G|925
9QOH|1|A2|C|926
9QOH|1|A2|C|927
9QOH|1|A2|G|928
9QOH|1|A2|G|929
*
9QOH|1|A2|C|1062
9QOH|1|A2|G|1063
9QOH|1|A2|G|1064
9QOH|1|A2|U|1065
9QOH|1|A2|C|1066
9QOH|1|A2|A|1067
9QOH|1|A2|C|1068
*
9QOH|1|A2|G|1081
9QOH|1|A2|A|1082
9QOH|1|A2|A|1083
9QOH|1|A2|G|1084
9QOH|1|A2|C|1085
9QOH|1|A2|C|1086
9QOH|1|A2|G|1087

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

Large ribosomal subunit protein uL4

Chain H2

Large ribosomal subunit protein eL6

Chain V2

Large ribosomal subunit protein eL29