J4_9QOH_007

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QOH|1|A2|G|3290
9QOH|1|A2|A|3291
9QOH|1|A2|C|3292
9QOH|1|A2|U|3293
9QOH|1|A2|G|3294
*
9QOH|1|A2|C|3306
9QOH|1|A2|A|3307
9QOH|1|A2|A|3308
9QOH|1|A2|A|3309
9QOH|1|A2|G|3310
*
9QOH|1|A2|U|3346
9QOH|1|A2|G|3347
9QOH|1|A2|A|3348
9QOH|1|A2|U|3349
9QOH|1|A2|U|3350
*
9QOH|1|A2|A|3477
9QOH|1|A2|U|3478
9QOH|1|A2|G|3479
9QOH|1|A2|A|3480
9QOH|1|A2|A2M|3481
9QOH|1|A2|C|3482

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain h2

60S ribosomal protein L41

Chain j2

Large ribosomal subunit protein eL43

Chain m2

Small subunit ribosomal RNA; SSU rRNA