J4_9QQP_001

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9QQP|1|A2|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|111
9QQP|1|A2|C|112
*
9QQP|1|A2|G|278
9QQP|1|A2|A|279
9QQP|1|A2|G|280
9QQP|1|A2|U|281
9QQP|1|A2|C|282
9QQP|1|A2|G|283
*
9QQP|1|A2|C|304
9QQP|1|A2|A|305
9QQP|1|A2|A|306
9QQP|1|A2|A|307
9QQP|1|A2|G|308
9QQP|1|A2|C|309
9QQP|1|A2|G|310
*
9QQP|1|A2|U|327
9QQP|1|A2|A|328
9QQP|1|A2|A|329
9QQP|1|A2|G|330

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

Large ribosomal subunit protein eL13

Chain H1

Large ribosomal subunit protein eL15

Chain b2

Large ribosomal subunit protein uL29

Chain c2

Large ribosomal subunit protein eL36