J4_9QQP_003

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCCGG*CGGUCAC*GAAGCCG

Length

22 nucleotides

Bulged bases

9QQP|1|A2|G|1063, 9QQP|1|A2|C|1085, 9QQP|1|A2|C|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|881
9QQP|1|A2|U|882
9QQP|1|A2|C|883
*
9QQP|1|A2|G|925
9QQP|1|A2|C|926
9QQP|1|A2|C|927
9QQP|1|A2|G|928
9QQP|1|A2|G|929
*
9QQP|1|A2|C|1062
9QQP|1|A2|G|1063
9QQP|1|A2|G|1064
9QQP|1|A2|U|1065
9QQP|1|A2|C|1066
9QQP|1|A2|A|1067
9QQP|1|A2|C|1068
*
9QQP|1|A2|G|1081
9QQP|1|A2|A|1082
9QQP|1|A2|A|1083
9QQP|1|A2|G|1084
9QQP|1|A2|C|1085
9QQP|1|A2|C|1086
9QQP|1|A2|G|1087

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

Large ribosomal subunit protein uL4

Chain H2

Large ribosomal subunit protein eL6

Chain V2

Large ribosomal subunit protein eL29